YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86606497
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYDLSPLW ISLRIASLAT AITFGVGTLA AYGMLHYRGR WRSLLEAILL APLVLPPTMV  60
   61 GFLLLLLFGR RTLLGQLLAS LNLSVIFTWY AGVITAVVVA LPLMYRTALG AFQQIDPTLV 120
  121 AAARTLGASR AKIFTQVLIP LALPGILAGI TLSFARALGE FGATLMLAGN IPGRTQTLSM 180
  181 AIFFAVQAGD MRGAAISSAL VLGLSLGVMT AVNLWFQRRP WQRPPSRPLQ VLTRRDLDFS 240
  241 TPAPRLWVDI DKKLPQFELQ AQLSCDGRPL GLLGASGSGK SLLLRCIAGI ETPDGGRILL 300
  301 NERALFDAEQ GIRLPPAQRR VGVIFQNYAL FPHLTVAQNI AFGIPAGLSE AEKQERIQAQ 360
  361 LRLVKLKGWE NRYPTELSGG QQQRVALARA LASEPEILLL DEPFSALDAH LRSHLEQEMG 420
  421 EILADYKGVT LLVTHNIEEA FRLCGDLAVM EQGRIIAQGD KRQLFEAPPC LSVAQLTGCK 480
  481 NISRAKLLGP QRVLALDWGC ELQVQGSPAG EYIAIRAHHL TFRPDGKLPN TFPAWLVKWS 540
  541 ETPHRLTLFF RLGGPPAHRQ DYHLQAEVWR ERWREVETWG SPWWLQLDPR HLRVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.62
Transmembrane Helix	13	35	0.89
Cytoplasmic	36	46	0.56
Transmembrane Helix	47	69	0.91
Non-Cytoplasmic	70	84	0.57
Transmembrane Helix	85	105	0.89
Cytoplasmic	106	132	0.64
Transmembrane Helix	133	155	0.87
Non-Cytoplasmic	156	164	0.55
Transmembrane Helix	165	186	0.56
Cytoplasmic	187	193	0.45
Transmembrane Helix	194	216	0.93
Non-Cytoplasmic	217	595	0.67