YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86606479
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPLSTPPRQ GSPFPSACAC SSSPRQALPP HLQQRIATHP CYSEAAHHHY ARMHVAVAPA  60
   61 CNIQCNYCNR KFDCANESRP GVVSELLTPA EAAHKVLVIA GKIPQLTVVG IAGPGDPLAN 120
  121 PKQTFETFAR IAEKAPDLKL CLSTNGLMLP DYIDEIKRLN IDHVTLTINM VDPEIGARIY 180
  181 PWIRWRRKRI RGVEAARILH ERQMESLDLL READILCKVN SVLIPGINDT HLLEVNRVIQ 240
  241 EKGAFLHNIM PLISAPEHGT YFGLIGQRGP TPQELKALQD RCSGNMRMMR HCRQCRADAV 300
  301 GLLGEDRSQE FTKERFMQMT PEYDPEKRRQ VQASIAQLQA QQQSTPTHWT ADLPPDSPSI 360
  361 LVAVASKGGG LVNRHFGHAR EFLIYEVNAR GAQFVGHRKV PQYCHGGSGE DNNLEQILDL 420
  421 IRDCRAVLVS KIGDCPMKRI REAGIEVVED YDLIETVALK FYRTWLVNQA LDSKSSRS

Type	Start	End	Confidence
Signal Peptide	1	27	0.71
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	478	0.99