YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86606349, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSAPLIPPA PSPELSREQS CELLRGQLSL ALKENNLEQA KSLLLPVQPV DIAEVIGELP  60
   61 EAQQALAFRL LPKDLAIRVY EHLDIELQQT LLREFRSQEI QDILDKMSPD DRARLFDELP 120
  121 AKVVAELLPQ LSPEEREATA LLLGYAPNTA GRIMTPEYIS LRENLTAAEA LERVRLLARE 180
  181 TETIYYLYVT DQERHLTGTL SLRELVMADP AQRLEEVMNR EVVFVSTHTD QEEVARVIQR 240
  241 YDLLAVPVVD AERRLVGIVT VDDVLDILEQ EATEDIYSLG GLQSGEEDYF DLSFWQAARK 300
  301 RVVWLLILLF TNTFTSTIIA GQEEVLSQVI ALAAFIPLLV DSGGNVGSQS STVVIRGLST 360
  361 ATVRLKDGFG VLAREAAVGA MLGIMLSLIT IGWAYALQRD LLVAISVGLS LFGISVLSSV 420
  421 SGAGLPFLFR SFGFDPALMA TSFITTIVDV LGVLIYFSVA RLILGI

Type	Start	End	Confidence
Cytoplasmic	1	301	0.87
Transmembrane Helix	302	321	0.91
Non-Cytoplasmic	322	375	0.62
Transmembrane Helix	376	397	0.90
Cytoplasmic	398	402	0.58
Transmembrane Helix	403	429	0.83
Non-Cytoplasmic	430	436	0.60
Transmembrane Helix	437	460	0.86
Cytoplasmic	461	466	0.50