YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86554803, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASARPPFPP AKRDPGIQRD LSLGVGALLG VVLIGTLWYH GVEQWPWVEA FYMSVITLTT  60
   61 VGFMEVQPLG DRGRLFTVAL ILMGVLSIGF MVNRFTEALI QGHFQEGIRQ RKWKKQMEAL 120
  121 NNHYIVCGFG RIGRQVAQEF QAEGVPFLVI DQSAEAIQVA QELGYVALQG DSTLDATLLA 180
  181 ARVQQAEGLI AALSSDAENL YVVLSARTLN PRIRTIARAN TEEALQKLQR AGVAHAISPF 240
  241 ITGGKRMAAA ALRPRVVDFV DGILSGRDRT FYLEEYELAA QECPYVGQTL GKANLRARSG 300
  301 ALVVAIRRAD GQLIGGPSGD TLLQPGDLLL CMGTAEQLRR LGQLLYPRP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	40	0.97
Non-Cytoplasmic	41	47	0.77
Transmembrane Helix	48	66	0.87
Cytoplasmic	67	74	0.75
Transmembrane Helix	75	95	0.91
Non-Cytoplasmic	96	349	0.94