YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86605768, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHVAPASST HLQASAVPIQ IPPLSQPSSV QLSLVVPTYN EASSICSLIR QLCAHLDTIL  60
   61 PGAYELIVVD DNSPDYTAKL AQELQEELPQ LKVICRQRER GLATAVLRGW QAARGEVLGV 120
  121 MDGDLQHPPE IILKLWPAIQ EGADLVVGSR YVGSGGVSHW NLGRRLVSRG AQAIGLVLLP 180
  181 GVFRRVSDPL SGLFLVRRQA IAGIPLSPKG YKLLIEVLAR GRVTTIAEVG YIFQERQNGE 240
  241 SKIQLQTCLQ YLHHLIHLRF SLGQVGAFLR FSTVGLSGTV VDMVLLYLLH DPANLGWDLI 300
  301 TSKLIASEMA ILNNFLWNDL WTFRHVTRLQ PGLSNRLKRL AKFNMICLIG LFLNSSLVIL 360
  361 LSERLGIHYL LANLIAIGIV VFWNFYLNSK LSWKSAEAKL DPGGDKS

Type	Start	End	Confidence
Cytoplasmic	1	266	0.86
Transmembrane Helix	267	289	0.86
Non-Cytoplasmic	290	298	0.81
Transmembrane Helix	299	321	0.77
Cytoplasmic	322	339	0.93
Transmembrane Helix	340	361	0.91
Non-Cytoplasmic	362	366	0.82
Transmembrane Helix	367	387	0.94
Cytoplasmic	388	407	0.97