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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYMC_BOVIN
Protein type: Globular with Signal Peptide
Type Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFVSEGAP GSLPVLAAAG RAQGRAELLI STVGPEECVV PFLTRPKVPV LQLDSGNYLF  60
   61 STSAICRYFF LLSGWEQDDL TNQWLEWEAT ELQPALSAAL YYLVVQGKKG EDVLGPVRRA 120
  121 LTHIDHSLSR RSCPFLAGET ESLADIVLWG ALYPLLQDPS YLPEELGALH SWFQTLSSQE 180
  181 PCQRAAETVL KQQGVLALRP YLQKQPQPSS LEGRLVSNEP EEEELATLSE EEIAVAVAAW 240
  241 EKGLESLPPL RPQQNPVLPV AGERNVLITS ALPYVNNVPH LGNIIGCVLS ADVFARYSRL 300
  301 RQWNTLYLCG TDEYGTATET KAMEEGLTPQ EICDKYHVIH ADIYRWFNIS FDFFGRTTTP 360
  361 QQTKITQDIF QRLLARGFVL QDTVEQLRCE HCARFLADRF VEGVCPFCGY EEARGDQCDK 420
  421 CGKLINAIEL KKPQCKVCRS CPVVKSSQHL FLDLPKLAAR VEEWLEKTLP GSDWTANARF 480
  481 IIRSWLRDGL KPRCITRDLK WGTPVPLEGF EDKVFYVWFD ATIGYLSITA NYTDQWEKWW 540
  541 KNPEQVNLYQ FMAKDNVPFH GIVFPSSALG AEDNYTLVSH LIATEYLNYE DGKFSKSRGV 600
  601 GVFGDMAQDT GIPADIWRFY LLYNRPEGQD SAFSWTDMLF KNNSELLNNL GNFINRAGMF 660
  661 VSKFFGGFVP EMVLTSDDQR LLTHITLELQ HYHQLLEKVR IRDALRSILT ISRHGNQYIQ 720
  721 VNEPWKRIKG GEADRQRAGT VTGLAVNIAA LLSVMLQPYM PTVSATIQAQ LQLPPPACSI 780
  781 LPTNFLCTLP AGHQIGTVSP LFQKLENDQI ESLKQRFSGG QAKASPKTAA GLTTAGPQQI 840
  841 QALTEEVTKQ GNIVRELKAQ KADKNQIAAE VAKLLDLKKQ LALAEGKPLE TSKGKKKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle