YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGH_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDERSLSDI CGGRLALHRR YYSPSCLEFC LSCPRISLRS ITAVTCTVWL AAYGLFTLCE  60
   61 NSMILSAAIF ITLLGLLGYL HFVKIDHETL LIIDSLGIQM TSSYASGKES TTFIEMGKVK 120
  121 DVIINEAIYM QKVIYYLCIL LKDPVEPHGI SQVVPIFQSA KPRLDCLIEV YRSCQEILAH 180
  181 QKAASTSP

Type	Start	End	Confidence
Cytoplasmic	1	35	0.95
Transmembrane Helix	36	56	0.86
Non-Cytoplasmic	57	62	0.77
Transmembrane Helix	63	83	0.94
Cytoplasmic	84	188	0.94