YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81673131, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAFLKTQ FVVHLLIGFV FVVSGLVINS IQLCTLVLWP VNKQLYRRQN CRLAYSLWSQ  60
   61 LVMLLEWWSC TECTLFTDQA TVDTFGKEHA VIILNHNFEI DFLCGWTMCE RFGVLGSSKV 120
  121 LAKRELLYVP LIGWTWYFLE IVFCKRKWEE DRDTVIKGLK SLANYPEYMW FLLYCEGTRF 180
  181 TEKKHRVSME VAASKGLPVL KYHLLPRTKG FTTAVQCLRG TVTAVYDVTL NFRGNKNPSL 240
  241 LGILYGKKYE ADMCVRRFPL EEIPLDEKEA AQWLHKLYQE KDALQEIYNQ KGVFPGQQFK 300
  301 PTRRPWTLLN FLFWATLLLS PLFSFVLGVF ASGSPLLILT FLGFVGAASF GVRRLIGVTE 360
  361 IEKGSSYGNQ EFKKKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.77
Transmembrane Helix	15	39	0.87
Cytoplasmic	40	307	0.92
Transmembrane Helix	308	329	0.91
Non-Cytoplasmic	330	335	0.71
Transmembrane Helix	336	357	0.89
Cytoplasmic	358	376	0.97