YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADT4_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQREPPKRKQ EKKVEKGLFD ATSFGKDLLA GGVAAAVSKT TVAPIERVKL LLQVQASSKQ  60
   61 ISPEAQYKGI VDCLVRIPRE QGFLSYWRGN LANVIRYFPT QALNFAFKDK YKQLFMSGVN 120
  121 KEKQFWRWFL ANLASGGAAG ATSLCVVYPL DFARTRLGAD IGKGPEERQF KGLGDCIMKI 180
  181 AKSDGIVGLY QGFGVSVQGI IVYRASYFGA YDTVKGLLPK PKETHFLVSF FIAQVVTTCS 240
  241 GILSYPFDTV RRRMMMQSGE AERQYKGTLD CFMKIYQQEG IGAFFRGAFS NILRGTGGAL 300
  301 VLVLYDKIKD LLNIDIGGSS SGD

Type	Start	End	Confidence
Cytoplasmic	1	127	0.72
Transmembrane Helix	128	150	0.70
Non-Cytoplasmic	151	225	0.59
Transmembrane Helix	226	247	0.89
Cytoplasmic	248	323	0.72