YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COQ2_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGSCGAGLV RGLRAETQAW LWGTRGRSLA LVHAARGLHA ANWQPSPGQG PRGRPLSLSA  60
   61 AAVVNSAPRP LQPYLRLMRL DKPIGTWLLY LPCTWSIGLA ADPGCLPDWY MLSLFGTGAV 120
  121 LMRGAGCTIN DMWDRDYDKK VTRTASRPIA AGDISTFRSF VFLGGQLTLA LGVLLCLNYY 180
  181 SIALGAASLL LVTTYPLMKR ITYWPQLALG LTFNWGALLG WSAVKGSCDP SVCLPLYFSG 240
  241 IMWTLIYDTI YAHQDKKDDA LIGLKSTALL FREDTKKWLS GFSVAMLGAL SLVGVNSGQT 300
  301 MPYYTALAAV GAHLAHQIYT LDINRPEDCW EKFTSNRTIG LIIFLGIVLG NLCKAKETDK 360
  361 TRKNIENRME N

Type	Start	End	Confidence
Cytoplasmic	1	83	0.94
Transmembrane Helix	84	104	0.85
Non-Cytoplasmic	105	111	0.67
Transmembrane Helix	112	133	0.54
Cytoplasmic	134	153	0.51
Transmembrane Helix	154	174	0.64
Non-Cytoplasmic	175	175	0.30
Transmembrane Helix	176	195	0.78
Cytoplasmic	196	202	0.68
Transmembrane Helix	203	224	0.78
Non-Cytoplasmic	225	231	0.62
Transmembrane Helix	232	251	0.71
Cytoplasmic	252	277	0.90
Transmembrane Helix	278	298	0.86
Non-Cytoplasmic	299	335	0.78
Transmembrane Helix	336	353	0.81
Cytoplasmic	354	371	0.83