YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PARL_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWRGWAQRG WGCGQAWTLP VCGGSYEELT AALAPSRLLR RRFNFFIQQK CGFRKAPRKV  60
   61 EPRRSDTSSE AYKRSALIPP VEETAFYPSP YPIRTLVKPL FFTVGFTGCA FGSAAIWQYE 120
  121 SLKSKVQSYF DGIKADWLDS IRPQKEGDFR KEINKWWNNL SDGQRTVTGI IAANVFVFCL 180
  181 WRVPSLQRTM IRYFTSNPAS KVLCSPMLLS TFSHFSLFHM AANMYVLWSF SSSIVNILGQ 240
  241 EQFMAVYLSA GVISTFVSYV CKVATGRYGP SLGASGAIMT VLAAVCTKIP EGRLAIIFLP 300
  301 MFTFTAGNAL KAIIAMDTAG MILGWKFFDH AAHLGGALFG IWYITYGHEL IWKNREPLVK 360
  361 IWHEMRTNSP KKGGGSK

Type	Start	End	Confidence
Cytoplasmic	1	98	0.88
Transmembrane Helix	99	119	0.89
Non-Cytoplasmic	120	165	0.94
Transmembrane Helix	166	184	0.94
Cytoplasmic	185	201	0.86
Transmembrane Helix	202	222	0.84
Non-Cytoplasmic	223	242	0.75
Transmembrane Helix	243	261	0.79
Cytoplasmic	262	293	0.41
Transmembrane Helix	294	315	0.80
Non-Cytoplasmic	316	326	0.57
Transmembrane Helix	327	347	0.83
Cytoplasmic	348	377	0.64