YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|122692411, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVLCVLLA GLPFAILTSR HTPFQRGLFC NDESIKYPYK EDTIPYPLLG  60
   61 GIIIPFSIIV MIVGETLSVY FSLLHSNSFI RNNYIATIYK AIGTFLFGAA ASQSLTDIAK 120
  121 YSIGRLRPHF LDVCDPDWSK INCSDGYIEN YICRGNAQKV KEGRLSFYSG HSSFSMYCMM 180
  181 FVALYLQARM KGDWARLLRP TLQFGLVAAS IYVGLSRVSD YKHHWSDVLT GLIQGALVAI 240
  241 LVAVYVSDFF KKRSSPFKER KEEDSHTTLH ETPTTGNHYR NSHQP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	61	0.89
Transmembrane Helix	62	84	0.89
Cytoplasmic	85	95	0.82
Transmembrane Helix	96	115	0.83
Non-Cytoplasmic	116	166	0.88
Transmembrane Helix	167	188	0.85
Cytoplasmic	189	196	0.85
Transmembrane Helix	197	216	0.88
Non-Cytoplasmic	217	227	0.77
Transmembrane Helix	228	250	0.88
Cytoplasmic	251	285	0.95