YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74354947
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.69
Transmembrane Helix	11	37	0.79
Cytoplasmic	38	57	0.70
Transmembrane Helix	58	79	0.91
Non-Cytoplasmic	80	94	0.64
Transmembrane Helix	95	114	0.96
Cytoplasmic	115	125	0.60
Transmembrane Helix	126	145	0.87
Non-Cytoplasmic	146	165	0.59
Transmembrane Helix	166	188	0.86
Cytoplasmic	189	194	0.48
Transmembrane Helix	195	213	0.76
Non-Cytoplasmic	214	221	0.73
Transmembrane Helix	222	243	0.91
Cytoplasmic	244	249	0.69
Transmembrane Helix	250	271	0.88
Non-Cytoplasmic	272	277	0.64
Transmembrane Helix	278	297	0.75
Cytoplasmic	298	378	0.85
Transmembrane Helix	379	399	0.87
Non-Cytoplasmic	400	408	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAFPELPMP LLVNLIGSLM GFVATVTLIP AFRGHFIAAR LCGQDLNKSS REQIPESQGV  60
   61 ISGAVFLIIL FCFIPFPFLN CFVEQQCKAF PHHEFVALIG ALLAICCMIF LGFADDVLNL 120
  121 RWRHKLLLPT AASLPLLMVY FTNFGNTTIV VPKPLRPILG LHLDLGILYY VYMGLLAVFC 180
  181 TNAINILAGI NGLEAGQSLV ISASIIVFNL VELDGDYRDD HIFSLYFMIP FFFTTLGLLY 240
  241 HNWYPSRVFV GDTFCYFAGM TFAVVGILGH FSKTMLLFFM PQVFNFLYSL PQLLHIIPCP 300
  301 RHRMPRLNTK TDKLEMSYSK FKTKSLSFLG TFILKVAENL GLLTVRHSED EDGAFTECNN 360
  361 MTLINLLLKV FGPMHERNLT LLLLLLQVVG SAVTFSIRYQ LVRLFYDV