YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT1B3_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTDKKSFN QSLAEWKLFI YNRTTGEFLG RTAKSWGLIL LFYLVFYGFL AALFSFTMWA  60
   61 MLQTLNDEVP KYRDQIPSPG LMVFPKPVSA LDFSFSLSDA ESYQGYIDDL KKFLKPYGLE 120
  121 EQKNLTDCTN GTFFEQKGPE YTACQFPLAL LEACSGVDDP TFGYQEGKPC ILVKMNRIIG 180
  181 LKPQGEPRIE CTGKSESTAF LSTYPSNGTI DLKYFPYYGK KLHGNYLQPL VAVQVGFGSD 240
  241 ADVREVMVEC KIDGSPNLKT QNDRDKFLGR VAFKITMHA

Type	Start	End	Confidence
Cytoplasmic	1	38	0.91
Transmembrane Helix	39	61	0.92
Non-Cytoplasmic	62	279	0.94