YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86283344, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSSNQKSN VARIVSENAE AEEAKVAVVA EAPTAEVLEK PAAPAQAAPA QAPLAPPAAK  60
   61 KRRSPVLPIV VLALLAGGGW YGYEWWTNGR FMVSTDDAYI EGDIATISPK VTGYVAKVNV 120
  121 VANQEVKAGD VLATLDNGDY QNALDQANAQ IATEQLSLSR IDAQIEGAKA SLVQAQAQKT 180
  181 ALEATVRGAE IKQKRQSDLQ AKSVGTTADL DDANTALDQA KANLAGGDAN IVAAQANIAI 240
  241 LEAQRREAEG SVRTLEIQRD KAARDLSFTV LKAPYDGIVG NRSVQEGDLV SPGQRLMALV 300
  301 PVRQLYIDAN FKETQIQHLV AGSKVNVHVD AYDDHPIVGT VESISPASGS VFSLLPPENA 360
  361 TGNFTKVIQR VPVRIALPQD ALDSGRLRAG LSVVVDVDTR TAPNK

Type	Start	End	Confidence
Cytoplasmic	1	64	0.87
Transmembrane Helix	65	83	0.85
Non-Cytoplasmic	84	405	0.99