YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86283151, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.12
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPNLRNFAL WAIIALLLIA LFSMFQTAPA QTGSRDIPYS QFLREVDAGR VKEVVVTGNR  60
   61 VSGSYVENGS TFQTYSPVID DSLLDRLQQK NVLVSARPET DGSSGFLSYL GTLLPMLLIL 120
  121 GVWLFFMRQM QGGSRGAMGF GKSKAKLLTE AHGRVTFDDV AGVDEAKQDL EEIVEFLRDP 180
  181 QKFQRLGGKI PRGVLLVGPP GTGKTLLARS VAGEANVPFF TISGSDFVEM FVGVGASRVR 240
  241 DMFEQAKKNA PCIIFIDEID AVGRHRGAGL GGGNDEREQT LNQLLVEMDG FEANEGVILI 300
  301 AATNRPDVLD PALLRPGRFD RQVVVPNPDI VGRERILKVH ARNVPLAPNV DLKVLARGTP 360
  361 GFSGADLMNL VNEAALMAAR RNKRVVTMQE FEDAKDKIMM GAERRSSAMT EAEKKLTAYH 420
  421 EAGHAITALN VAVADPLHKA TIIPRGRALG MVMQLPEGDR YSMSYKWMVS RLCIMMGGRV 480
  481 AEELTFGKEN ITSGASSDIE QATKLARAMV TQWGFSDQLG QVAYGENQQE VFLGHSVSQS 540
  541 KNVSEATAQK IDNEVRRLID EAYTQARTIL TEKHDEFVAL AEGLLEYETL TGDEIKALIR 600
  601 GEKPSRDLGD DSPPSRGSAV PKAGVRPATK GDEPEAGLEP QPH

Type	Start	End	Confidence
Signal Peptide	1	30	0.72
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	105	0.87
Transmembrane Helix	106	127	0.66
Cytoplasmic	128	218	0.56
Transmembrane Helix	219	233	0.12
Non-Cytoplasmic	234	643	0.60