YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86357744, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.97
Transmembrane Helix	8	27	0.93
Non-Cytoplasmic	28	56	0.93
Transmembrane Helix	57	77	0.92
Cytoplasmic	78	85	0.88
Transmembrane Helix	86	107	0.92
Non-Cytoplasmic	108	127	0.86
Transmembrane Helix	128	149	0.92
Cytoplasmic	150	157	0.91
Transmembrane Helix	158	180	0.91
Non-Cytoplasmic	181	226	0.94
Transmembrane Helix	227	248	0.92
Cytoplasmic	249	260	0.85
Transmembrane Helix	261	283	0.89
Non-Cytoplasmic	284	309	0.86
Transmembrane Helix	310	330	0.96
Cytoplasmic	331	350	0.92
Transmembrane Helix	351	373	0.88
Non-Cytoplasmic	374	382	0.75
Transmembrane Helix	383	402	0.73
Cytoplasmic	403	409	0.69
Transmembrane Helix	410	432	0.89
Non-Cytoplasmic	433	457	0.75
Transmembrane Helix	458	484	0.80
Cytoplasmic	485	497	0.64
Transmembrane Helix	498	517	0.72
Non-Cytoplasmic	518	526	0.70
Transmembrane Helix	527	547	0.95
Cytoplasmic	548	555	0.92
Transmembrane Helix	556	579	0.89
Non-Cytoplasmic	580	586	0.75
Transmembrane Helix	587	605	0.92
Cytoplasmic	606	646	0.93
Transmembrane Helix	647	672	0.80
Non-Cytoplasmic	673	691	0.93
Transmembrane Helix	692	715	0.94
Cytoplasmic	716	743	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGNRRLDI VLGLGAAALI LVPWYRIEGG FFGFKWPSAF PFSADTAPGL LQILQHGRTW  60
   61 LAGVVLLFLL GCLARLVRDP MRRGTLLASL GAVGLVFLSL QGLAIGFSGW TWAISENLFG 120
  121 ILSEGQPSMG AGAVLLALVY VLLFAFGLAE RGVMKGDAFI VGSICILAFL VTVFVFYPIG 180
  181 SMFIASVQDF DGSFNPDGLI RNIQDPGIWS LGCIAGEERC GVAWRTLLLA VMTASGSTLL 240
  241 GLGFALVATR TRFPFKKGLR LLTVLPIITP PFVIGLALTL LFGRAGVITE ALSSLLGIEP 300
  301 GRWLYGLTGI WIAQVLSFTP IAFLVLIGVV EGVSPSMEEA SQTLRAGRWR TFWRVSLPLM 360
  361 KPGLANAFLI GFIESMADFG NPLVLGGTHG VLSTEIFFAV VGSQNDPSRA AVLAIVLLCF 420
  421 TLSAFLAQRF WLSGKSFATV TGKGDSGAHI ALPRGLSIAV HAVVVPWMVF TVVVYGMILI 480
  481 GGFVKTWGLD NSLTLDHYAR AFSVGFDNGA IAWTGVAWNS FWTTMEIALV SAPLTAAVGL 540
  541 LTAYIIVRQK FVGRNVFEFA LMMSFAIPGT VIGVSYIMAF NLPPIEMTGS ALILILCFVF 600
  601 RNMPVGVRGG IAAMSQLDKS LDEASLTLRA DSFRTIRKVI LPLLRPAITA ALVYSFVRAI 660
  661 TSISAVIFLV SAEYNMATSY IVGLVENGEY GVAIAYSSML IVVMSSVIAG FQLVVGERRL 720
  721 RRENRVAGTS SAPSVPLGQE KTA