YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86357048, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPFPPFEP NGPDDSARGP RLREIPFRLV FPNLITILAI CAGLTGIRLA FENRYELAVA  60
   61 MVLLAAFLDG IDGRVARLMK ATSKFGAQMD SLADIVNFGV APALVVYVFA LDQARSLGWI 120
  121 AALIYAIAAG LRLARFNVMA ERENKASWQS EYFVGVPAPA GAMLVLLPVY LGFLGLATDR 180
  181 TFAYLSSVYT VAIAFLLISR LPVWSGKSEG NRLRRDLVLP MMLGVVLYVA LLMSYTWEVM 240
  241 VFTVAAYLVS LPFGARKWQR KYGTLTIEEP GVGDDDIGRH I

Type	Start	End	Confidence
Cytoplasmic	1	28	0.95
Transmembrane Helix	29	50	0.92
Non-Cytoplasmic	51	56	0.80
Transmembrane Helix	57	76	0.91
Cytoplasmic	77	90	0.90
Transmembrane Helix	91	111	0.91
Non-Cytoplasmic	112	116	0.88
Transmembrane Helix	117	136	0.93
Cytoplasmic	137	151	0.92
Transmembrane Helix	152	174	0.92
Non-Cytoplasmic	175	181	0.83
Transmembrane Helix	182	204	0.90
Cytoplasmic	205	216	0.86
Transmembrane Helix	217	235	0.86
Non-Cytoplasmic	236	238	0.52
Transmembrane Helix	239	255	0.68
Cytoplasmic	256	281	0.58