YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86285148, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCYVLGRRKN RRRPSARTAL DFRLEKPRRR QLQSADQEEA SVSISNSVIV TDGAPAEPRR  60
   61 KVAVLSKRQR KIRSALVAYS FIAPNFLGFA VFTLGPILFA FALAFMHWDG SNAITFAGFD 120
  121 NFWRLFNDKA FIAAFWNTII YTVASVPATL LCALGLAVLL NQKIAGRNFF RTAMFFPYVA 180
  181 SLVAVAVVWN MIFNPEMGPV NMILYTLGLD PKNMPGWAAD RHWAMVTVIL FGIWKNMGYY 240
  241 MVIYLAGLQG INAELYEAAD LDGANSWQKF IHVTVPQLGP TTFFVTVMLT IQSFKVFDQI 300
  301 FMITQGGPGT STLVLVYHIY NEAFISWDLG YSSMISLVLF FLVLAVTIFQ FRRQREDEA

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	103	0.87
Non-Cytoplasmic	104	137	0.83
Transmembrane Helix	138	160	0.91
Cytoplasmic	161	171	0.78
Transmembrane Helix	172	193	0.91
Non-Cytoplasmic	194	222	0.80
Transmembrane Helix	223	243	0.76
Cytoplasmic	244	299	0.56
Transmembrane Helix	300	320	0.67
Non-Cytoplasmic	321	328	0.80
Transmembrane Helix	329	351	0.90
Cytoplasmic	352	359	0.90