YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86283854, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFTIPAPFT AIHTIFDLAF KTRLDTVLEA IQEKVSAPLI ACVTLWIIVQ GVLVMRGEVD  60
   61 VRGGITRVIM VSVVVALVVG QANYHDYVVS VFEETIPDFI QQFSGSGLPL QTIPTQLDSM 120
  121 FALSQAAFQK IASEIGPMND QDILAFQGAQ WVFYGTLWSA FGIYDAVGIL TEVLLTIGPL 180
  181 VLVGYIFDRT RDIAAKWIGQ LITYGFLLLL LNIVATIVIL TEATALALIL GVITLAGTTA 240
  241 AKIIGLYELD MFFLTGDALI VALPAIAGNI GGSYWSGVTQ SANSLYRRFA QVERR

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.62
Transmembrane Helix	35	54	0.66
Cytoplasmic	55	62	0.86
Transmembrane Helix	63	84	0.86
Non-Cytoplasmic	85	160	0.90
Transmembrane Helix	161	187	0.84
Cytoplasmic	188	196	0.89
Transmembrane Helix	197	219	0.87
Non-Cytoplasmic	220	224	0.66
Transmembrane Helix	225	246	0.84
Cytoplasmic	247	252	0.73
Transmembrane Helix	253	275	0.84
Non-Cytoplasmic	276	295	0.76