YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71661587
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYHAMFGRP WCLYILYSLC VLFLAVLTNA SSVEDTEGVW HSPSAVIKPT EGGARMLHEE  60
   61 NGGPDNNGET GRLKGEFARL RKLTEGHVTE AEAKEEAAKR HQAEEEATKR HQAEEEATKR 120
  121 HQAEEEATKR HQAEEEATKR HQAEEEEEKR HQAEEEAAKR HQAEEEAEKR HQAEEEATKR 180
  181 RQAEEEAEKR HHAEEEAEKR RQAEEEATKR RQAEEEAEKR HQAEEEAEKR RQAEEEAEKR 240
  241 RQAEEEAEKR RQAEEEAEKR RQAEEEATKR RQAEEEAEKR HQAEEEAEKR HQAEEEAEKR 300
  301 HQAEEEAEKR RQAEEEATKR RQAEEEAEKR RQAEEEAEKR RQAEEEAEKR HHAEEEATKR 360
  361 HQAEEEATKR RQAEEEAEKR HHAEEEATKR RQAEEEAEKR HHAEEEATKR RQAEEEAEKR 420
  421 HHAEEEATKR RQAEEEAEKR HHAEEEATKR RQAEEEAEKR HHAEEEATKR RQAEEEAEKR 480
  481 HHAEEEATKR HQAEEEATKR RQAEEEAAKR RQAEEEAEKR HQSEKDTQNS LKRYNSRGNK 540
  541 GLEFLRILVF QTDELESSVN AATEEINKFC FLAGTISTSC HEALSDLHAA TSRLAVAVNT 600
  601 LGKNSDIEDE PPRGSERKSN KNGQEGSRPF FGSQPHGEEE AIPAEIWGVW NWVGALLLIV 660
  661 LASVINRMRE APKWKREEDK IKFHGKNGEK EDQRGSHCSI GSEKPENGLP LNSVLSQGAN 720
  721 RNTAPGLVRR PPVVKSEVKT SFPAPPKQPF VRPFLPDPGE ESALQVGGTP KQHGVTGPVP 780
  781 FRPPQPVWLN QNGPSPSGPS SDLCHSLLVA ENSVAAEKAK EDSAASLGEL RNPFLQRWS

Type	Start	End	Confidence
Signal Peptide	1	32	0.83
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	645	0.99
Transmembrane Helix	646	666	0.81
Cytoplasmic	667	839	0.86