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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71891758
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPSAAWNRAS SGVARKRLNE AEKLSAVQEA QLKRLEVTRP RVLGSREQGQ VPRMARQPPP  60
   61 PWVHAAFLLC LLSLGGAIEI PMDLTQPPTI TKQSAKDHIV DPRDNILIEC EAKGNPAPSF 120
  121 HWTRNSRFFN IAKDPRVSMR RRSGTLVIDF RSGGRPEEYE GEYQCFARNK FGTALSNRIR 180
  181 LQVSKSPLWP KENLDPVVVQ EGAPLTLQCN PPPGLPSPVI FWMSSSMEPI TQDKRVSQGH 240
  241 NGDLYFSNVM LQDMQTDYSC NARFHFTHTI QQKNPFTLKV LTNHPYNDSS LRNHPDMYSA 300
  301 RGVAERTPSF MYPQGTASSQ MVLRGMDLLL ECIASGVPTP DIAWYKKGGD LPSDKAKFEN 360
  361 FNKALRITNV SEEDSGEYFC LASNKMGSIR HTISVRVKAA PYWLDEPKNL ILAPGEDGRL 420
  421 VCRANGNPKP TVQWMVNGEP LQSAPPNPNR EVAGDTIIFR DTQISSRAVY QCNTSNEHGY 480
  481 LLANAFVSVL DVPPRMLSPR NQLIRVILYN RTRLDCPFFG SPIPTLRWFK NGQGSNLDGG 540
  541 NYHVYENGSL EIKMIRKEDQ GIYTCVATNI LGKAENQVRL EVKDPTRIYR MPEDQVARRG 600
  601 TTVQLECRVK HDPSLKLTVS WLKDDEPLYI GNRMKKEDDS LTIFGVAERD QGSYTCVAST 660
  661 ELDQDLAKAY LTVLGRPDRP RDLELTDLAE RSVRLTWIPG DANNSPITDY VVQFEEDQFQ 720
  721 PGVWHDHSKY PGSVNSAVLR LSPYVNYQFR VIAINEVGSS HPSLPSERYR TSGAPPESNP 780
  781 GDVKGEGTRK NNMEITWTPM NATSAFGPNL RYIVKWRRRE TREAWNNVTV WGSRYVVGQT 840
  841 PVYVPYEIRV QAENDFGKGP EPESVIGYSG EDYPRAAPTE VKVRVMNSTA ISLQWNRVYS 900
  901 DTVQGQLREY RAYYWRESSL LKNLWVSQKR QQASFPGDRL RGVVSRLFPY SNYKLEMVVV 960
  961 NGRGDGPRSE TKEFTTPEGV PSAPRRFRVR QPNLETINLE WDHPEHPNGI MIGYTLKYVA1020
 1021 FNGTKVGKQI VENFSPNQTK FTVQRTDPVS RYRFTLSART QVGSGEAVTE ESPAPPNEAY1080
 1081 TNNQADIATQ GWFIGLMCAI ALLVLILLIV CFIKRSRGGK YPVREKKDVP LGPEDPKEED1140
 1141 GSFDYSDEDN KPLQGSQTSL DGTIKQQESD DSLVDYGEGG EGQFNEDGSF IGQYTVKKDK1200
 1201 EETEGNESSE ATSPVNAIYS LA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle