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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|168272906
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFFSALLV LLLVALSALF LGRWLVVRLA TKWCQRKLQA ELKIGSFRFF WIQNVSLKFQ  60
   61 QHQQTVEIDN LWISSKLLSH DLPHYVALCF GEVRIRTDLQ KVSDLSAPFS QSAGVDQKEL 120
  121 SFSPSLLKIF CQLFSIHVDA INIMVLKVDT SESLWHIQIS RSRFLLDSDG KRLICEVSLC 180
  181 KINSKVLKSG QLEDTCLVEL SLALDLCLKV GISSRHLTAI TVDVWTLHAE LHEGLFQSQL 240
  241 LCQGPSLASK PVPCSEVTEN LVEPTLPGLF LLQQLPDQVK VKMENTSVVL SMNSQKRHLT 300
  301 WTLKLLQFLY HRDEDQLPLR SFTANSDMAQ MSTELLLEDG LLLSQSRQRI VCLNSLKASV 360
  361 QVTTIDLSAS LVLNTCIIHY RHQEFSHWLH LLALETQGSS SPVLKQRKKR TFPQILAPII 420
  421 FSTSISNVNI SIQLGDTPPF ALGFNSISLD YQHLRPQSIH QRGVLTVDHL CWRVGSDSHI 480
  481 QRAPHPPNMH VWGEALVLDS FTLQGSYNQP LGLSSTQSDT LFLDCTIRGL QVEASDTCAQ 540
  541 CLSRILSLMG PQSGKSAVSR HSSFGESVSL LWKVDLKVED MNLFTLSALV GASEVRLDTL 600
  601 TILGSAETST VGIQGLVLAL VKSVTEKMQP CCKAPDIPTP VLSLSMLSIT YHSSIRSLEV 660
  661 QCGAGLTLLW SPPDHMYLYQ HVLATLQCRD LLRATVFPET VPSLALETSG TTSELEGRAP 720
  721 EPLPPKRLLN LTLEVSTAKL TAFVAEDKFI TLAAESVSLS RHGGSLQAYC PELAAGFDGN 780
  781 SIFNFKEVEV QLLPELEEMI LHRNPFPALQ TLRNRVWLLS FGSVSVEFPY QYDFSRTLDE 840
  841 AVGVQKWLKG LHQGTRAWAS PSPVPLPPDL LLKVEHFSWV FLDDVFEVKL HDNYELMKDE 900
  901 SKESAKRLQL LDAKVAALRK QHGELLPARK IEELYASLER KNIEIYIQRS RRLYGNTPMR 960
  961 RALLTWSLAG LELVALADAS FHGPEHVVEQ VQELDPGSPF PPEGLDLVIQ WCRMLKCNVK1020
 1021 SFLVRIRDYP RYLFEIRDWR LMGRLVGTEQ SGQPCSRRRQ ILHLGLPWGN VAVERNMPPL1080
 1081 KFYHDFHSEI FQYTVVWGPC WDPAWTLIGQ CVDLLTKPSA DPSPPLPWWD KSRLLFHGDW1140
 1141 HMDIEQANLH QLATEDPYNT TENMHWEWSH LSFHWKPGQF VFKGDLDINV RTASKYDDCC1200
 1201 FLHLPDLCMT LDLQWLCHGN PHDHHSVTLR APEFLPEVPL GQLHDSYRAF RSENLNLSIK1260
 1261 MDLTRHSGTI SQPRILLYSS TLRWMQNFWA TWTSVTRPIC RGKLFNNLKP SKKKLGQHYK1320
 1321 QLSYTALFPQ LQVHYWASFA QQRGIQIECS QGHVFTRGTQ RLIPQAGTVM RRLISDWSVT1380
 1381 QMVSDLSQVT VHLMASPTEE NADHCLDPLV TKTHLLSLSS LTYQRHSNRT AEEELSARDG1440
 1441 DPTFHTHQLH LVDLRISWTT TNRDIAFGLY DGYKKAAVLK RNLSTEALKG LKIDPQMPAK1500
 1501 KPKRGVPTSA SAPPRVNTPS FSGQPDKGSS GGAYMLQKLI EETDRFVVFT EEESGMSDQL1560
 1561 CGIAACQTDD IYNRNCLIEL VNCQMVLRGA ETEGCVIVSA AKAQLLQCQH HPAWYGDTLK1620
 1621 QKTSWTCLLD GMQYFATTES SPTEQDGRQL WLEVKNIEEH RQRSLDSVQE LMESGQAVGG1680
 1681 MVTTTTDWNQ PAEAQQAQQV QRIISRCNCR MYYISYSHDI DPELATQIKP PEVLENQEKE1740
 1741 DLLKKQEGAV DTFTLIHHEL EISTNPAQYA MILDIVNNLL LHVEPKRKEH SEKKQRVRFQ1800
 1801 LEISSNPEEQ RSSILHLQEA VRQHVAQIRQ LEKQMYSIMK SLQDDSKNEN LLDLNQKLQL1860
 1861 QLNQEKANLQ LESEELNILI RCFKDFQLQR ANKMELRKQQ EDVSVVRRTE FYFAQARWRL1920
 1921 TEEDGQLGIA ELELQRFLYS KVNKSDDTAE HLLELGWFTM NNLLPNAVYK VVLRPQSSCQ1980
 1981 SGRQLALRLF SKVRPPVGGI SVKEHFEVNV VPLTIQLTHQ FFHRMMGFFF PGRSVEDDEV2040
 2041 GDEEDKSKLV TTGIPVVKPR QLIATDDAVP LGPGKGVAQG LTRSSGVRRS FRKSPEHPVD2100
 2101 DIDKMKERAA MNNSFIYIKI PQVPLCVSYK GEKNSVDWGD LNLVLPCLEY HNNTWTWLDF2160
 2161 AMAVKRDSRK ALVAQVIKEK LRLKSATGSE VRGKLETKSD LNMQQQEEEE KARLLIGLSV2220
 2221 GDKNPGKKSI FGRRK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle