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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71891685
Protein type: Transmembrane
Type Confidence: 0.68
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASASRCDPG SGSRREREEE LQWRRRRRQR QRAAAPAAPA GGIEAVNMAS ASYHISNLLE  60
   61 KMTSSDKDFR FMATNDLMTE LQKDSIKLDD DSERKVVKMI LKLLEDKNGE VQNLAVKCLG 120
  121 PLVSKVKEYQ VETIVDTLCT NMLSDKEQLR DISSIGLKTV IGELPPASSG SALAANVCKK 180
  181 ITGRLTSAIA KQEDVSVQLE ALDIMADMLS RQGGLLVNFH PSILTCLLPQ LTSPRLAVRK 240
  241 RTIIALGHLV MSCGNIVFVD LIEHLLSELS KNDSMSTTRT YIQCIAAISR QAGHRIGEYL 300
  301 EKIIPLVVKF CNVDDDELRE YCIQAFESFV RRCPKEVYPH VSTIINICLK YLTYDPNYNY 360
  361 DDEDEDENAM DADGGDDDDQ GSDDEYSDDD DMSWKVRRAA AKCLDAVVST RHEMLPEFYK 420
  421 TVSPALISRF KEREENVKAD VFHAYLSLLK QTRPVQSWLC DPDAMEQGET PLTMLQSQVP 480
  481 NIVKALHKQM KEKSVKTRQC CFNMLTELVN VLPGALTQHI PVLVPGIIFS LNDKSSSSNL 540
  541 KIDALSCLYV ILCNHSPQVF HPHVQALVPP VVACVGDPFY KITSEALLVT QQLVKVIRPL 600
  601 DQPSSFDATP YIKDLFTCTI KRLKAADIDQ EVKERAISCM GQIICNLGDN LGSDLPNTLQ 660
  661 IFLERLKNEI TRLTTVKALT LIAGSPLKID LRPVLGEGVP ILASFLRKNQ RALKLGTLSA 720
  721 LDILIKNYSD SLTAAMIDAV LDELPPLISE SDMHVSQMAI SFLTTLAKVY PSSLSKISGS 780
  781 ILNELIGLVR SPLLQGGALS AMLDFFQALV VTGTNNLGYM DLLRMLTGPV YSQSTALTHK 840
  841 QSYYSIAKCV AALTRACPKE GPAVVGQFIQ DVKNSRSTDS IRLLALLSLG EVGHHIDLSG 900
  901 QLELKSVILE AFSSPSEEVK SAASYALGSI SVGNLPEYLP FVLQEITSQP KRQYLLLHSL 960
  961 KEIISSASVV GLKPYVENIW ALLLKHCECA EEGTRNVVAE CLGKLTLIDP ETLLPRLKGY1020
 1021 LISGSSYARS SVVTAVKFTI SDHPQPIDPL LKNCIGDFLK TLEDPDLNVR RVALVTFNSA1080
 1081 AHNKPSLIRD LLDTVLPHLY NETKVRKELI REVEMGPFKH TVDDGLDIRK AAFECMYTLL1140
 1141 DSCLDRLDIF EFLNHVEDGL KDHYDIKMLT FLMLVRLSTL CPSAVLQRLD RLVEPLRATC1200
 1201 TTKVKANSVK QEFEKQDELK RSAMRAVAAL LTIPEAEKSP LMSEFQSQIS SNPELAAIFE1260
 1261 SIQKDSSSTN LESMDTS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle