YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|70571383, gi|...
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVTTTHTGL VKEANNCKCK QFRKTETFYS GQNFCSAELK SKVSKSVTKT IYETVQVTST  60
   61 NKNCNRHRIS KTNTRMPFSM RIRRRELSAA VAVILMIIFP REFSYSVGVA AQSVPSPTQR 120
  121 LSSTPALFED LPEESLANTK DPCKARLFLG DIALDEEDVE NIFGETADDF IQNVGKAPAT 180
  181 PTRAPIGDVM SSPPSPSSNP NRRRRKGRGR KKRRRNRKSR KNVQRQQATL DFDVASPSNM 240
  241 TSEVFASYNS SQGNRTNTPV RTTGDTLRTG IPNLRELSLV LDREVSRRRS DVMDIDDVAR 300
  301 AGRRRGGRRN RKRKRKGRRR NRHRRLRYKS RRQRAEEVFK RTRRAATARQ ERKWPHGVIP 360
  361 YTISANFTGS QRAMFKQAMR HWEGQTCLTF IERTNEDNYI RFTYRPCGCC SYVGRKGTGP 420
  421 QAISIGKNCD KFGIVVHELG HVIGFWHEHT RPDRDDHIEI IYKNIQAGQE YNFEQMDSSE 480
  481 INSLGEKYDY YSIMHYARNT FSKGMFLDTI RPMVDQETGM RPSIGQRTQL SEGDVIQANK 540
  541 LYSCPTCGST MQSTTGNISS PNWPASYPAY SNCEWRISVT PGEKIVMDFT SLNIFRSRGC 600
  601 WYDYIEIRDG HWERSPLIGR YCGNNLPPQI TSTDSRIWMK FRSTSNFNGS GFRLRYEAVC 660
  661 GGDIRRNSGQ IQSPNYPDDY RPSKECIWTV VVDEGYQVGL SFQAFKVERH DTCSYDYLEV 720
  721 RDGPNATSEL IGRFCGSDRP DDIKATTNTL WIKFVSDASV NKAGFAASFF KERDECALES 780
  781 NGGCQQKCIN TLGSFKCACY PGYELSRDGM TCEAACGGYV TTPDGEITSP NWPREYPTNK 840
  841 QCIWQIVAPP QHRITIEFDK FELEGNEVCK YDYVEVRSGL TDESTFHGKF CGTELPPVIT 900
  901 STINQMRIKF NSDDTVAKRG FRIRFTSDRD ECAVRNGGCM HVCVNTVGSY MCSCRNGYVL 960
  961 HSNGHGCKEA GCEHDVTSYV GEITSPNWPN KYPSRKECTW HISTIAGHRV KLVFNEFELE1020
 1021 SHPDCAYDHL ELYDGSNSTA PILGRYCGSK KPSSVVASGI HMFVKFFSDA SVQKRGFSAS1080
 1081 HTTVCGGSLN ASARTKDLFS HPQYGDTIYV NGRECDWVIT ASNGYGVELM FRAFEVEDET1140
 1141 DCSYDFVEVF DGPTDSAVRF GRFCGYESPD TIFSSGDSLL VRFHSDDTVN KKGFQASYSS1200
 1201 TVLQDTVSLV QVNAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle