YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70568819
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAGVRRP TTSSLAKRHA SSASDNVGKV ASSASASKKR PALANVTNQR HGTGSANAGR  60
   61 APLPESSKIA PCTTKIVSIK KGPSASTNSG FPGAILPTSS SVKQNIVAVG RSTFIPKSDV 120
  121 VLPKTLAAPV SCSMDVSPDK SDSLSVSMDE SMSTCDSLKS PDVEHVDYID VAAVDSIERK 180
  181 ASNMLCISDH MEIAGNLCKR DALASLESGD KIVDVDENLD DPQLCATIAC DIYKHLRASE 240
  241 AKKRPATNFM ERVQKDINAS MRAILIDWLV EVAEEYRLVP DTLYLTVNYI DRYLSGNVMD 300
  301 RQRLQLLGIA CMMIASKYEE ICAPQVEEFC YITDNTYFKD EVLEMESAVL NYLKFEMTAP 360
  361 TAKCFLRRFV RAAQGVNETP LLQFECLANY ITELSLLEYS MLCFAPSLIA AASIFLARFI 420
  421 LLPSKRPWNH TLRHYTLYQP YDLRDCVLAL HGFCCNSHNS SLPAIREKYS QHKYKFVAKK 480
  481 YCPLSIPPEY FHNVSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	400	0.96
Transmembrane Helix	401	422	0.87
Cytoplasmic	423	496	0.91