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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68533063
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPPRDASELG ARSRMGAPFV WALGLLMLQM LLFVAGEQGT QDITDASERG LHMQKLGSGS  60
   61 VQAALAELVA LPCLFTLQPR PSAARDAPRI KWTKVRTASG QRQDLPILVA KDNVVRVAKS 120
  121 WQGRVSLPSY PRRRANATLL LGPLRASDSG LYRCQVVRGI EDEQDLVPLE VTGVVFHYRS 180
  181 ARDRYALTFA EAQEACRLSS AIIAAPRHLQ AAFEDGFDNC DAGWLSDRTV RYPITQSRPG 240
  241 CYGDRSSLPG VRSYGRRNPQ ELYDVYCFAR ELGGEVFYVG PARRLTLAGA RAQCRRQGAA 300
  301 LASVGQLHLA WHEGLDQCDP GWLADGSVRY PIQTPRRRCG GPAPGVRTVY RFANRTGFPS 360
  361 PAERFDAYCF RAHHPTSQHG DLETPSSGDE GEILSAEGPP VRELEPTLEE EEVVTPDFQE 420
  421 PLVSSGEEET LILEEKQESQ QTLSPTPGDP MLASWPTGEV WLSTVAPSPS DMGAGTAASS 480
  481 HTEVAPTDPM PRRRGRFKGL NGRYFQQQEP EPGLQGGMEA SAQPPTSEAA VNQMEPPLAM 540
  541 AVTEMLGSGQ SRSPWADLTN EVDMPGAGSA GGKSSPEPWL WPPTMVPPSI SGHSRAPVLE 600
  601 LEKAEGPSAR PATPDLFWSP LEATVSAPSP APWEAFPVAT SPDLPMMAML RGPKEWMLPH 660
  661 PTPISTEANR VEAHGEATAT APPSPAAETK VYSLPLSLTP TGQGGEAMPT TPESPRADFR 720
  721 ETGETSPAQV NKAEHSSSSP WPSVNRNVAV GFVPTETATE PTGLRGIPGS ESGVFDTAES 780
  781 PTSGLQATVD EVQDPWPSVY SKGLDASSPS APLGSPGVFL VPKVTPNLEP WVATDEGPTV 840
  841 NPMDSTVTPA PSDASGIWEP GSQVFEEAES TTLSPQVALD TSIVTPLTTL EQGDKVGVPA 900
  901 MSTLGSSSSQ PHPEPEDQVE TQGTSGASVP PHQSSPLGKP AVPPGTPTAA SVGESASVSS 960
  961 GEPTVPWDPS STLLPVTLGI EDFELEVLAG SPGVESFWEE VASGEEPALP GTPMNAGAEE1020
 1021 VHSDPCENNP CLHGGTCNAN GTMYGCSCDQ GFAGENCEID IDDCLCSPCE NGGTCIDEVN1080
 1081 GFVCLCLPSY GGSFCEKDTE GCDRGWHKFQ GHCYRYFAHR RAWEDAEKDC RRRSGHLTSV1140
 1141 HSPEEHSFIN SFGHENTWIG LNDRIVERDF QWTDNTGLQF ENWRENQPDN FFAGGEDCVV1200
 1201 MVAHESGRWN DVPCNYNLPY VCKKGTVLCG PPPAVENASL IGARKAKYNV HATVRYQCNE1260
 1261 GFAQHHVATI RCRSNGKWDR PQIVCTKPRR SHRMRRHHHH HQHHHQHHHH KSRKERRKHK1320
 1321 KHPTEDWEKD EGNFC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle