YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86477162, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	398	0.96
Transmembrane Helix	399	423	0.85
Cytoplasmic	424	441	0.84
Transmembrane Helix	442	461	0.88
Non-Cytoplasmic	462	504	0.71
Transmembrane Helix	505	525	0.69
Cytoplasmic	526	537	0.72
Transmembrane Helix	538	560	0.88
Non-Cytoplasmic	561	570	0.69
Transmembrane Helix	571	591	0.85
Cytoplasmic	592	592	0.57
Transmembrane Helix	593	617	0.74
Non-Cytoplasmic	618	634	0.78
Transmembrane Helix	635	657	0.93
Cytoplasmic	658	740	0.90
Transmembrane Helix	741	760	0.57
Non-Cytoplasmic	761	769	0.50
Transmembrane Helix	770	802	0.73
Cytoplasmic	803	834	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSMFRSEEV ALVQLLLPTA SAYNCVSQLG ELGLVEFRDL NESVSAFQRR FVVEVRRCEE  60
   61 LEKTFTFLRE EVQRAGLTLT PPEGTLPAPP PRDLLRIQEE TDRLAQELRD VRGNQQALRA 120
  121 QLHQLQLHSA VLGQSHAPPM AAVHTEGPTT ERTPLLSATP GPHADLKVNF VAGAVEPCKA 180
  181 AALERLLWRA CRGFLIASFK ETEGQLEDPV TGEPATWMTF VISYWGEQIG QKVRKITDCF 240
  241 HCHVFPYLEQ EEARLRTLQQ LQQQSQELQE VLGETERFLS QVLGRVQQLL PPGQVQIRKM 300
  301 KAVHLTLNQC SVNTTHKCLI AEVWCATRDL PTVQQALQSG SSEEGVSAVA HRIPCQDMPP 360
  361 TLIRTNRFTS SFQGIVDAYG VGRYREVNPA PYTIITFPFL FAVMFGDVGH GLLMFLFALA 420
  421 MVLTENQPAV KTTQNEIWQT FFGGRYLPLL MGLFSIYTGF IYNECFSRAT TIFPSGWSVA 480
  481 AMANQSGWSD EYLSQHPMLT LNPNITGVFL GPYPFGIDPI WSLATNHLSF LNSFKMKMSV 540
  541 ILGVTHMAFG VFLSIFNHVH FGQAHRLLLE TVPELIFLLG LFGYLVFLIV YKWLYVSAAS 600
  601 ASSAPSILIH FINMFLFSQN PTNRLLFHGQ VVVQYALVVL ALATVPILLL GTPLYLLRQH 660
  661 HRRNTQRRPT AGRQDEDSDK LLASPDASTL ENSWSPDEEK AGSSGDEEAE FVPSEIFMHQ 720
  721 AIHTIEFCLG CISNTASYLR LWALSLAHAQ LSEVLWAMVM RIGLGMGREI GVASVVLVPV 780
  781 FAAFAVLTVA ILLVMEGLSA FLHALRLHWV EFQNKFYSGT GYKLSPFAFT VDSD