YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAV1_PONAB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGKYVDSE GHLYTVPIRE QGNIYKPNNK AMAEELSEKQ VYDAHTKEID LVNRDPKHLN  60
   61 DDVVKIDFED VIAEPEGTHS FDGIWKASFT TFTVTKYWFY RLLSALFGIP MALIWGIYFA 120
  121 ILSFLHIWAV VPCIKSFLIE IQCISRVYSI YVHTVCDPLF EAVGKIFSNV RINLQKEI

Type	Start	End	Confidence
Cytoplasmic	1	97	0.91
Transmembrane Helix	98	130	0.74
Non-Cytoplasmic	131	178	0.62