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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125624721, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLFFALAL MFATVTAFLV APSVKAETTV KIASDSSYAP FEFQNGQKKW VGIDVDVMQE  60
   61 VAKINDWKLE MSYPGFDAAL QNLKAGQVDG VIAGMTITDE RKDTFDFSNP YYTSALTIAT 120
  121 TKDSKLTDYS ELKGKAVGAK NGTAAQTWLQ ENQKKYGYNI KTYSDGVHMF ASLSSGNIVG 180
  181 AMDEVPVISY AMKQGQDLAT NFPSISLSGG YGFAVMKGKN QTLVDGFNKA LTEMKSNGDY 240
  241 DKILKKYGIT TSKKATPKKD VYTIASDNSF APFEFQNDNK QFTGIDVDLL NAIAKNQGFK 300
  301 LKWNFIGFQA AVDSVQSGHA DGMMSGMSIT DARKQVFDYG NPYYSSNLTI ATSSTDDSIK 360
  361 SWKDLKGKTL GAKNGTASFD YLNDHAKEYG YTVKTFTDAT TMYSSLNNGS INALMDDEPV 420
  421 IKYAIKQGQK FTTPIKPIPD GQYGFAVKKG SNPELIEMFN NGLANLRANG EYDKIIDKYL 480
  481 ASDTKTIQSS AKENTFFGIL QNNWEQIGRG LLVTLELAVL SFILAMIVGI IFGLFSVAPS 540
  541 KILRTIARIY VDLNRSIPLL VLTIFIFYGI PNLLQIITGH QSPLNEFTAG VIALTLNSSA 600
  601 YIAEIVRSGV QAVPSGQMEA SRSLGVTYLT SMRKVILPQA IKITIPSLIN QFIITLKDTT 660
  661 LVSVIGLVEL LQTGQIIVAR NFQAFRVYGL IGLVYMIVLL FLMWVGRRVE KRMK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle