YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S47A1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.95
Transmembrane Helix	63	84	0.89
Non-Cytoplasmic	85	91	0.75
Transmembrane Helix	92	114	0.90
Cytoplasmic	115	131	0.89
Transmembrane Helix	132	153	0.93
Non-Cytoplasmic	154	172	0.85
Transmembrane Helix	173	191	0.91
Cytoplasmic	192	200	0.84
Transmembrane Helix	201	224	0.87
Non-Cytoplasmic	225	231	0.80
Transmembrane Helix	232	253	0.91
Cytoplasmic	254	274	0.92
Transmembrane Helix	275	295	0.93
Non-Cytoplasmic	296	319	0.88
Transmembrane Helix	320	341	0.87
Cytoplasmic	342	353	0.87
Transmembrane Helix	354	375	0.90
Non-Cytoplasmic	376	397	0.88
Transmembrane Helix	398	417	0.91
Cytoplasmic	418	426	0.70
Transmembrane Helix	427	449	0.86
Non-Cytoplasmic	450	453	0.74
Transmembrane Helix	454	476	0.90
Cytoplasmic	477	564	0.97
Transmembrane Helix	565	586	0.86
Non-Cytoplasmic	587	590	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSITSYNVT QMNGDTKQEK CDDVLSTSST QKFCGGCRKK LRSLLPVNYK TEIVELLKLA  60
   61 GPVFISQLMI FLISFVSTVF CGHLGKTELA GVALAIAVIN VTGISIGSGL ASACDTLISQ 120
  121 TFGSNNLKRV GVILQRGILI LLLACFPCWA LLINTEPILL AVRQSPNVAS LSQLYVKIFM 180
  181 PALPAAFMYQ LQGRYLQNQG IIWPQVITGA AGNILNALIN YVFLHLLELG VAGSAAANTI 240
  241 SQYSLAVFLY VYIRWKNLHK ATWDGWSRDC LQEWGAFIRL ALPSMLMLCV EWWTYEIGGF 300
  301 LAGLISETEL GAQSVVYELA TIAYMFPLGF AVAASVRVGN ALGAGNTERA KLSAKVALVC 360
  361 GVLVSCVVAT LIGCTKDVIA YIFTTEEEIV SRVSQVMIMY GFFHLFDAIA GITGGIVRGA 420
  421 GKQLLGALCN IVGYYFVGFP TGVSLMFALS MGIIGLWIGF FGCVFLQSLF FIILIYKLDW 480
  481 KKATQEALIR AGVQLTETKD ESFGLENKGC TEEAAKESQI TEEGLTDANT DLEGLSKGGE 540
  541 GISEAGAKTT VGAVLTTKQL IVRRGLAVLL MVLILAGGIV LNEMLVRYLR