YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68440069
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCDSVKAQA KIAQMTAVSD LPFTFVKNPG FLMLMEHHAH ESQEQEFLNI YLIRRPLLFA  60
   61 FSQDLGSAAW DALCANSAVD DLQHAAVTAG PHARGHPPFL TKGIEPTLEM PKRRDILAIV 120
  121 LIVLPWTLLI TVWHQSAIAP LLAIRKVCHH LVKEILIIPE RLTIHRQRLA DDATETRHEN 180
  181 GPATDSKEYC SQDKDIVEVV RTEYVYTRPP PWSDVLPTIH VITPTYSRPV QKAELTRLAN 240
  241 TFLHVPNLHW ILVEDSQRRT PLVTRLLRET GLNYTHLNVE TPRNYKLRGD TRDPRIPRGT 300
  301 MQRNLALRWL RETFSSNSSQ AGIVYFADDD NTYSLELFEE MRSTRKVSVW PVAFVGGLRY 360
  361 ESPKVNAAGK VYGWKTVFDP HRPFAIDMAG FAINLRLILF KPQAYFKLRG VKGGYQESSL 420
  421 LRELVTLNDL EPKAANCTKI LVWHTRTEKP VLVNEGKKGF TDPNVEI

Type	Start	End	Confidence
Cytoplasmic	1	115	0.86
Transmembrane Helix	116	134	0.84
Non-Cytoplasmic	135	467	0.97