YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C25L1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNISEVVFQ LPTSSASDRV LQPLWDYLLL RHYTLISSPF FPVLLAFSSY IIFSVPFAVL  60
   61 DVLGEKAPLF KYKIQKDRRP TVGMMLRTLW TAVYNHLVFV LPAVLITNVV MPMPPLPTVA 120
  121 PTVWEMFSGG LGALLVFDTQ YFLWHMVHHK NPHLYRWVHA IHHDYISPFS WSTQHLSGVE 180
  181 LMTVGFWSNI DPILLKCHPL TVWTLTVYSI WMSVEDHIGY DLPFSPGHLV PFGLLGGAMA 240
  241 HDMHHQKPSS NFAPFFSHWD KIFGTAITVK LTQKSEKEKQ VA

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.61
Transmembrane Helix	40	64	0.77
Cytoplasmic	65	85	0.66
Transmembrane Helix	86	110	0.80
Non-Cytoplasmic	111	122	0.61
Transmembrane Helix	123	144	0.85
Cytoplasmic	145	282	0.59