YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APJA_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPTSEYTET YDYYDTGYND SGCDYSEWEP SYSLIPVLYM LIFILGLSGN GVVIFTVWRA  60
   61 KSKRRAADVY IGNLALADLT FVITLPLWAV YTALGYHWPF GVALCKISSY VVLVNMYASV 120
  121 FCLTCLSFDR YLAIVHSLSS GRLRSRATML ASLGAIWFLS CLLAVPTLLF RTTVDDTGSN 180
  181 RTTCAMDFSL VTLNQDHESL WIAGLSLSSS ALGFLLPFLA MTVCYCFIGC TVTRHFSHLR 240
  241 KEDQKKRRLL KIITTLVVVF AFCWTPFHVL KSMDALSYLD LAPNSCGFLH FLLLAHPYAT 300
  301 CLAYVNSCLN PFLYAFFDLR FRSQCLCLLN LKKAMHGHMS SMSSTLSAQT QKSEVQSLAT 360
  361 KV

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.99
Transmembrane Helix	35	58	0.91
Cytoplasmic	59	68	0.92
Transmembrane Helix	69	91	0.89
Non-Cytoplasmic	92	106	0.82
Transmembrane Helix	107	128	0.86
Cytoplasmic	129	147	0.84
Transmembrane Helix	148	170	0.92
Non-Cytoplasmic	171	209	0.94
Transmembrane Helix	210	232	0.89
Cytoplasmic	233	248	0.92
Transmembrane Helix	249	270	0.92
Non-Cytoplasmic	271	292	0.87
Transmembrane Helix	293	314	0.83
Cytoplasmic	315	362	0.93