YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125825158, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNVSKTALF MSTISRQHDI LMGSLYSVFF VLSLLGNGML LFVAYRKRSS LKPAEFFVVN  60
   61 LSVSDLGMTL SLFPLAIPSA LAHRWLFGEI TCLCYAVCGV LFGLCSLTNL TALSSVCCLK 120
  121 VCFPNYGNKF SSSHACVMVI GVWCYASVFA VGPLVHWGSF GPEPYGTACC INWYTPSHDA 180
  181 LAMSYIISLF IFCYVVPCTI IILSYTFILV TVRGSQQAVQ QHVSPQTKVT NAHALIVKLS 240
  241 VAVCIGFLTA WSPYAIVAMW AAFSANEQVP PTAFALAAIM AKSSTIYNPM VYLLFKPNFR 300
  301 KSLSQDTQMF RHRICLSHSK ASPSPGMKDQ ERQSSQQCNN KDGSISTPFS SGQAESYGAC 360
  361 HVYAEAGPHY QQISRQITAR VLEGSVQSEI PVKQLTEKMQ NDLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.95
Transmembrane Helix	21	45	0.89
Cytoplasmic	46	55	0.94
Transmembrane Helix	56	77	0.90
Non-Cytoplasmic	78	90	0.66
Transmembrane Helix	91	113	0.83
Cytoplasmic	114	133	0.78
Transmembrane Helix	134	156	0.89
Non-Cytoplasmic	157	182	0.94
Transmembrane Helix	183	209	0.87
Cytoplasmic	210	234	0.90
Transmembrane Helix	235	257	0.84
Non-Cytoplasmic	258	272	0.77
Transmembrane Helix	273	295	0.85
Cytoplasmic	296	404	0.94