YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238550137, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDKMEKAA MDKMVQETEM EEPGLFEQLV QPCMAELVGT AFFVLMGCLC VIESAQEGHT  60
   61 LQAALVHGLA LAVVIGCMVE ISGSHFNPSF TIAVFLSGGL ELKMVLPYLI SQVSGGLLGA 120
  121 VMAKGMTSSE KYAQAQGAAF TVLQADDHIM KALFAEAAMT CLATLAVLLS AVNGKSKNHM 180
  181 FPFLVGCTVM VNVLAGANVS GACLNPVRAL GPAVLTNYWT HHWIYWVGPI TGGLIAAALV 240
  241 RLFLGDNDTR VVMK

Type	Start	End	Confidence
Cytoplasmic	1	32	0.78
Transmembrane Helix	33	55	0.83
Non-Cytoplasmic	56	62	0.64
Transmembrane Helix	63	84	0.89
Cytoplasmic	85	103	0.52
Transmembrane Helix	104	123	0.68
Non-Cytoplasmic	124	151	0.81
Transmembrane Helix	152	172	0.89
Cytoplasmic	173	180	0.82
Transmembrane Helix	181	202	0.91
Non-Cytoplasmic	203	222	0.87
Transmembrane Helix	223	245	0.94
Cytoplasmic	246	254	0.97