YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|209168752, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVNYSTVLD SSVSQRDSSK RVLTGCFLSL LILTTLLGNT LVCAAVTKFR HLRSKVTNFF  60
   61 VISLAISDLL VAILVMPWKA ATEIVGFWPF GAFCDVWVAF DIMCSTASIL NLCVISVDRY 120
  121 WAISSPFRYE RKMTPKVAFI MISVAWTLSI LISFIPVQLN WHKAQTTSYT ELNGTYGELP 180
  181 PDNCDSSLNR TYAISSSLIS FYIPVAIMLV TYTRIYRIAQ KQIRRISALE RAAESAKNRH 240
  241 SSMGNNASME SESSFKMSFK RETKVLKTLS VIMGVFVCCW LPFFVLNCMV PFCNPNESTD 300
  301 FLCISSTTFD VFVWFGWANS SLNPIIYAFN ADFRKAFSIL LGCHRLCPGS SAIEIVSINN 360
  361 NCGPPSTSQY QPKGHIPKEG NNSNYEIPHS IICQEEENQK KEDDSGIKTF DKLSPSMSGT 420
  421 LDSDADVSLE KINPITQNGQ HKSIPC

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.90
Transmembrane Helix	21	46	0.76
Cytoplasmic	47	55	0.88
Transmembrane Helix	56	78	0.90
Non-Cytoplasmic	79	96	0.85
Transmembrane Helix	97	117	0.93
Cytoplasmic	118	136	0.88
Transmembrane Helix	137	157	0.94
Non-Cytoplasmic	158	197	0.90
Transmembrane Helix	198	216	0.95
Cytoplasmic	217	264	0.98
Transmembrane Helix	265	286	0.91
Non-Cytoplasmic	287	310	0.80
Transmembrane Helix	311	329	0.66
Cytoplasmic	330	446	0.77