YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68426632, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNTSLEMEM LNVSNVTHCP KNDNFKYPLY SMVFSIVFMV GLITNVAAMY IFMCSLKLRN  60
   61 ETTTYMMNLV VSDLLFVLTL PLRVFYFVQQ NWPFGSLLCK LSVSLFYTNM YGSILFLTCI 120
  121 SVDRFLAIVY PFRSRGLRTK RNAKIVCAAV WVLVLSGSLP TGFMLNSTNK LENNSISCFE 180
  181 NFSSKEWKSH LSKVVIFIET VGFLIPLMLN VVCSAMVLQT LRRPNTVSRG GKLNKKKILR 240
  241 MIIVHLFIFC FCFIPYNVNL VFYSLVRTNT LKGCAAESVV RTIYPIALCI AVSNCCFDPI 300
  301 VYYFTSETIQ NSIKRKTQTG HSIDVKFSEA LQSETSSTLQ FSLRSIKNKM FHNESHV

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.97
Transmembrane Helix	32	54	0.91
Cytoplasmic	55	64	0.87
Transmembrane Helix	65	87	0.90
Non-Cytoplasmic	88	106	0.90
Transmembrane Helix	107	128	0.84
Cytoplasmic	129	144	0.81
Transmembrane Helix	145	165	0.91
Non-Cytoplasmic	166	195	0.97
Transmembrane Helix	196	221	0.84
Cytoplasmic	222	240	0.91
Transmembrane Helix	241	260	0.93
Non-Cytoplasmic	261	282	0.91
Transmembrane Helix	283	305	0.56
Cytoplasmic	306	357	0.60