YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220673360, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLGLILVS SALLAGLCTA GPQPLKVTTI KEEPYAMSKG SELEGFCIDM LSAISNKLGF  60
   61 KYDVHLVKDG RYGKTDDSGN WNGMIGEVVR GEADIAVAPL TLTAQREAVV DMSKPFMQTG 120
  121 LSFIMRKDLG SDDSQFLSLL KLFSTEMWMG VLVAYLLTSI CIFLVSRISP CEWEQPEKDN 180
  181 NSFTLSHSFW YTVGALTLQG AGPHPKALSG RVITSIWWIF SLVLLACYFA NLSLWLHSDN 240
  241 QQLSIKTFED LANQNVIEYG TIKDSSSFNF FKNSNNPTYH RIYEHIKEAQ SYSLNAAEGF 300
  301 RRAQKGNYAF IGESVSLDLA VARYCNLTRA PEIIGMRGYS IAAPLGSPLI KNLSVAILRL 360
  361 SESGELDYFR SKWWASSCVA KDSKGAPLKP ASLKGVFLLL AFGLGLGIFL ALMELAAKSR 420
  421 KVANSEQKSC CSVMSAELSQ RFRGGEVATP ESSEKNKA

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	146	0.99
Transmembrane Helix	147	166	0.96
Cytoplasmic	167	186	0.81
Transmembrane Helix	187	203	0.73
Non-Cytoplasmic	204	213	0.62
Transmembrane Helix	214	236	0.90
Cytoplasmic	237	394	0.70
Transmembrane Helix	395	417	0.86
Non-Cytoplasmic	418	458	0.59