YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68405077
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCLHSLLLL CPQANVALFE ACCKEKIQQF EDAGSDEEDI WDEKDVTFAP EAPRRPRSSG  60
   61 STDSEESTDS EEEDGKRDPF ESTNATSDDR MEVDSGDGTV WTANFDDIPM DTGSSTAPSA 120
  121 PVSNSTASVP ESTGWSSPNA SGDGETGWAD FSSFTPVSPK DPLRCNSPVA METSIETVDP 180
  181 LGVNAPMQQE NQWLPNETTP TSPRGKTGDA SDPEEEPVSD RITETVTNGS MKETVSLTVD 240
  241 AKTETAVFKS EEEKQSTSED ASAKLFVAES GDAEKSNCPS SNCQKPGCGN RRKVDSFGEE 300
  301 NSYKKLGCFN AGPQVFETSS TMKVVKLEKS AHSRAVFRLL ISMHGTPKPD LNLADDYRTS 360
  361 SPIASIVHPI CEGHHQEENT QQHGSGGTEK QMNDTVTQTP IKRTETDNKQ SESAFHQQSL 420
  421 LRRAIGILLI FFFIFGMHRC VGGVCVSLIV CAFLTETLGM VIAAKEKRGW TLNSAGYLLG 480
  481 PRRIDHLIQI KDTPSARGRE DLLGQYAIDS HRSLSDKHGL AGKREMPLDD DFKTGALRIA 540
  541 DEDVVHTIID FLSYLKLKEL L

Type	Start	End	Confidence
Signal Peptide	1	16	0.85
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	423	0.94
Transmembrane Helix	424	458	0.73
Cytoplasmic	459	561	0.69