YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68404306
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.85
Transmembrane Helix	20	41	0.84
Non-Cytoplasmic	42	936	0.98
Transmembrane Helix	937	955	0.93
Cytoplasmic	956	963	0.82
Transmembrane Helix	964	986	0.91
Non-Cytoplasmic	987	994	0.78
Transmembrane Helix	995	1014	0.92
Cytoplasmic	1015	1031	0.87
Transmembrane Helix	1032	1055	0.77
Non-Cytoplasmic	1056	1075	0.68
Transmembrane Helix	1076	1097	0.69
Cytoplasmic	1098	1363	0.68
Transmembrane Helix	1364	1385	0.80
Non-Cytoplasmic	1386	1390	0.53
Transmembrane Helix	1391	1411	0.76
Cytoplasmic	1412	1461	0.51
Transmembrane Helix	1462	1481	0.77
Non-Cytoplasmic	1482	1492	0.67
Transmembrane Helix	1493	1515	0.94
Cytoplasmic	1516	1553	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMERLGRGG TKASAGPNTL LKAALAVCVC VCIALLIAVI TVSQKASNED LCLGPHCVEA  60
   61 AGSILSKMDQ SVDPCDDFYQ YACGGWLREN PIPEDSSSYG IYPWLRQNVD LKLKELLEQP 120
  121 VRSGDIEAVK KAKVLYASCM NESALEIEDA NPLLKNLKQK EFRWPVLGDA LGSSSRWVES 180
  181 QFNLLETLAQ IRSQHSKSVL IRLFVAPDDK NSNQYIIKLD QASLSLSSRE DYITNTTEAQ 240
  241 MYREALLRLM VDVSVMLGAS EQAAEAQMKS VLDFEMKLAQ IVIPYENRTS ENMYNKYSLS 300
  301 KLQRTVPDVT TGTTSLTPRW DKCVNYVENT LIYAAGRLFV DKHFQEDKKH MMEELINGIR 360
  361 WAFIDILEKE NEWMDEETKR KAIDKAHAVL PKVGYPDFIL NDTYINEDIK RLAFTMTDYF 420
  421 GNVMQTLKFI AQSDIGWLRK TVPRTEWFTN PTTVNAFYSS STNQIRFPAG ELQKPFFWGL 480
  481 NYPRSLSYGA IGVIVGHELT HGFDNNGRKY DKDGNLDQWW SNSSINRFTE KTQCMIDQYN 540
  541 SYYWKEAGLN VKGKRTLAEN IADNGGIRES CRAYRRWVEK ERGGVEEPLL PGVGLTHNQL 600
  601 FFLSYAHVRC NAYRPEAARD QIQSGAHSPP KYRVIGAMSN FEEFRKAFNC PETSIMNRGA 660
  661 ESCRVWMLRQ VLHEGLRTSF HKLGHFVANH PVFFASAPVL ISILLGASFS RYRIEENVEY 720
  721 LLAPKHSLAK IEGNLVDSLF PVNRSKHTLY SDLQTPGRYG RVIVTSRRGS VLDPHHVNSV 780
  781 LKLHNTITQI QVPMLGFNYT FAHLCLLDES KSCIVDDILR VLEEMRSARA SNHSVPPLRY 840
  841 PITKLKDGRE AYIGHQLGGV LASGGRDGVR SARALQLTYY LQAVSPLNEV VAASWELLFC 900
  901 RELENFGKAH PELSLHPFTS SSLQRDFQRT SRVSERPLLF SLAVCLSLAM LCCSMRDCVR 960
  961 TKPWLGLLAL VTVSLATLTS AGILNLTGGK YNSTYLGIPF VMLGHGLFGT FEMLSSWRRT1020
 1021 REDQHVKERV AAVFSDCMLP FTASTALHVV TFGIGASPFT NIEAVRLFCQ NACISVLFNY1080
 1081 LYILTFYGSN LVFAGYLENN YRHSLFCRRV PKPELLQQKP AWYRFLMYTH YNEEATEAGP1140
 1141 LCAYESHLLV AFMKRYYCDW ITNTYVKPFV VLFYLVYVSF ALMGYLQVSE GSDLSNVVAT1200
 1201 ETSTIAYTRA QQRYFSSYSP VIGFYIYESI EYWNTSVQED LLEYIKGFER ISWFESYLNY1260
 1261 LHGLNITTSL SRSNFTERLR SGFLRQPRYV HFTDDIIFAK RSDGEFDVVA SRMFLIAKTT1320
 1321 ENKREEMSIL LDTLRKLSLT SRVKFIIFNP SFVYMDRYAS SVGAPLKNSC IAALFLLFFS1380
 1381 TFLAADPLVN AWLTVTVASV EFGLVGFMTL WRVELDCVSV LCLIYGVNYA VDSSAPLVSA1440
 1441 FALGRESTRT RWVKLALEQH GVPALQSYLC YGAALLPLAA VPSNLTRTLF RCLFLTAIIT1500
 1501 AFHCLAILPV LLTFLPPSKK KRRERKNAAE NREEIECVEM VDSTRVVDQI TTV