YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68396844, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRQKVILEK MARIFQIRNM LMRQALAECL GTLILVMFGC GALAQHILSG GSHGMFLTVN  60
   61 FAFGFAATLG ILVCGQVSGG HINPTVTFSL CLLGREPWRK FPVYFLAQTV GAFLGAGIIF 120
  121 GMYFDAIWKF GQGSLDVDGV NATAGIFATY PSKHLTLLNG FFDQMIGTAA LIVCILAIVD 180
  181 PYNNPIPQGL EAFTVGFVVL VIGLSMGFNS GYAVNPARDL GPRIFTAIAG WGSKVFSAES 240
  241 YWSFVPVFAP FIGAVFGVMV YQLMVGCHVK GEERDKREAV EREEKERLKL SAVSDKDAA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	45	0.89
Non-Cytoplasmic	46	60	0.74
Transmembrane Helix	61	82	0.86
Cytoplasmic	83	102	0.86
Transmembrane Helix	103	124	0.94
Non-Cytoplasmic	125	159	0.86
Transmembrane Helix	160	182	0.84
Cytoplasmic	183	191	0.67
Transmembrane Helix	192	213	0.89
Non-Cytoplasmic	214	244	0.80
Transmembrane Helix	245	265	0.90
Cytoplasmic	266	299	0.93