YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|161611428, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLKVTFTK TNRDKLAQVL WVLNWVSVVT GVTLFSMGLF LKVEIEKRRE LMSKEIDSVP  60
   61 NMLICVGLTA CAINFLGGKI CYDCVDTTKF LRWKLLMLPY ITCTFFFTFC ILVGALMCYS 120
  121 MRKDLEESLY FGLRDAMRYY KDTDMPGRCY IKRTMDMLQM QFQCCGNGGY RDWFHIQWIS 180
  181 NRYLNLSNSD VVERIRSNVE GKYLIDGVPF SCCGLYSPRP CIQHQITNNS AHYNYDYLKE 240
  241 DLNLNRRGCL QALLEHYTQI MQSIGLIVLI IWLFEVSVLT GVRYLQTAME NVLRQGDPDC 300
  301 ESDGWLLENS IADTARYNFN IIKNLGKCYQ VDDDPNIDVP STSRQMQENV PVKQIPEAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.68
Transmembrane Helix	21	41	0.94
Cytoplasmic	42	58	0.67
Transmembrane Helix	59	80	0.81
Non-Cytoplasmic	81	95	0.66
Transmembrane Helix	96	119	0.90
Cytoplasmic	120	259	0.69
Transmembrane Helix	260	282	0.63
Non-Cytoplasmic	283	359	0.68