YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PCAT1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFPNRKLHT AVNGGDSGVS THFRNPFVHE LRFTTLQKLK IAVMTVTLFP VRLLFAAFMM  60
   61 LLAWPFAFVA TVGRSENAVE PLSWWRWLVD LALKAIMRAM WFSGGFHWVR VKGRPALPSE 120
  121 APILTMAPHS SYFDAIPVTM TMASIVMKAE SKDIPVWGTL IKFIRPVFVS RSDQDSRRKT 180
  181 VEEIKRRASS NGEWPQIMIF PEGTCTNRSC LIAFKPGAFI PGVPVQPVVL RYPNELDTIS 240
  241 WTWQGPGAFK ILWLTLCQLH NFVEIEYLPT YTPSEEEKKD PALFASNVRR IMAKALGLPI 300
  301 IDYSFEDCQL AMAKGPLRLP KHTCLLEFAR LVRLLGLKTK VTDEVLQEEA CSARQLCGRR 360
  361 LDMEGFAQYL HQPMTEAVQD IFSLFEEHGM MDVREYVIAL SVVCRPFRYL DTVKLAFRMF 420
  421 EAQEDGAIVE DELTVILKTA LGVGDLAVSE LFRAIDSQDK GKITFDELCS FMEKCPDLVE 480
  481 QYHCLCESIS QHSRESTSSS NGFCADFSPR NHSKKQD

Type	Start	End	Confidence
Cytoplasmic	1	47	0.87
Transmembrane Helix	48	68	0.88
Non-Cytoplasmic	69	90	0.78
Transmembrane Helix	91	109	0.70
Cytoplasmic	110	131	0.61
Transmembrane Helix	132	147	0.26
Non-Cytoplasmic	148	517	0.59