YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQENVSSRMD TPTNISLVGS GDAVTESLEY KTVSVFLVLL VCGVGIVGNI MVVLVVLTTR  60
   61 HMRTPTNCYL VSLAVADLMV LVAAGLPNIS ESLMATWVYG HAGCLGITYF QYLGINASSC 120
  121 SITAFTVERY IAICHPMRAQ TVCTVSRAKR IIAVVWVFTC VYCMLWLFLV DIQVNPDGRV 180
  181 QCGYRVSRDL YLPIYLIDFT IFYVIPLLLA IALYGLIARI LYLNPLPHPP DSGTVIAPTL 240
  241 RRSCKEPADG GKAIRQGRPK SALSSRKQVT KMLAVVVVLF ALLWMPYRTL VLINSFVSTP 300
  301 YLDSWFILFC RTCIYANSAI NPVVYNLMSQ KFRSAFRGLY RCRREDLHQR TLSMLQSGYS 360
  361 LGRDPRICSN GTRDTPKKVG SVTPEQKQNK GFENKVENTD RQISDGVENE INPSIKKNAC 420
  421 ANCDIDESKT SEMPTVEDVD MSKINDNGKI MEESGNSAQD IIADMSNTQQ TQRVSGEFTS 480
  481 TLGEAEQNDA ELSHSVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.93
Transmembrane Helix	35	57	0.95
Cytoplasmic	58	67	0.82
Transmembrane Helix	68	87	0.95
Non-Cytoplasmic	88	107	0.74
Transmembrane Helix	108	131	0.76
Cytoplasmic	132	150	0.91
Transmembrane Helix	151	170	0.94
Non-Cytoplasmic	171	198	0.91
Transmembrane Helix	199	218	0.93
Cytoplasmic	219	268	0.95
Transmembrane Helix	269	287	0.93
Non-Cytoplasmic	288	304	0.84
Transmembrane Helix	305	327	0.69
Cytoplasmic	328	497	0.76