YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68389607
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILAGGEVC WQGEERASLC GMSCTHFGVR VVSNDALPGR SGGRKIILEP RFRISLVILL  60
   61 RVCKLDVFGV IAVFWTKPSL SSQRTMMEYL SDKFSLKSPA IKGSDYYMDQ VMDTLDNVQY 120
  121 YNKASPKCVQ AFPMQSNDQH SSMDRSSPCD NQSVTYCAPK SEESSLHAME NCCSLRVSPA 180
  181 TSGPDKTDLD ELGEKCDSNV SSSKKRRHRT TFTSAQLEEL EKVFQKTHYP DVYVREQLAM 240
  241 RTELTEARVQ VWFQNRRAKW RKRERYGQIQ QAKSHFAATY DISMLPRTDS YSQISNNLWT 300
  301 GPSAGSSVVS SCMIPRGSPP CVTSPYPHSP RAAEHGYVGF PNHQQNQFGV NHVSLNNFFA 360
  361 DSLLASSANS HAAFETKPEF ERRSSSIAVL RMKAKEHTAN ISWAM

Type	Start	End	Confidence
Cytoplasmic	1	53	0.65
Transmembrane Helix	54	75	0.62
Non-Cytoplasmic	76	405	0.99