YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94733049, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.96
Transmembrane Helix	77	96	0.90
Non-Cytoplasmic	97	105	0.81
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	145	0.83
Transmembrane Helix	146	168	0.90
Non-Cytoplasmic	169	232	0.91
Transmembrane Helix	233	251	0.94
Cytoplasmic	252	260	0.73
Transmembrane Helix	261	282	0.91
Non-Cytoplasmic	283	308	0.89
Transmembrane Helix	309	330	0.91
Cytoplasmic	331	340	0.80
Transmembrane Helix	341	363	0.90
Non-Cytoplasmic	364	465	0.90
Transmembrane Helix	466	489	0.86
Cytoplasmic	490	501	0.86
Transmembrane Helix	502	520	0.95
Non-Cytoplasmic	521	534	0.86
Transmembrane Helix	535	556	0.94
Cytoplasmic	557	575	0.97
Transmembrane Helix	576	600	0.91
Non-Cytoplasmic	601	622	0.93
Transmembrane Helix	623	645	0.91
Cytoplasmic	646	741	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNSKTIKR EIDDDDVTES VKDLLSNEDS CDDSFKKSSL MVGDVPQNKQ KDVEEGSEEE  60
   61 EEEEEEERPA WGSKLQYILA QVGFSVGLGN VWRFPYLCQK NGGGAYLVPY LILLLLIGIP 120
  121 LFFLELAVGQ RIRRGSIGVW NYISPHLGGI GFASCLVCFF VALYYNVIIG WSLFYFSQSF 180
  181 QQPLPWHECP LVKNKTNTYI EPECEKSSAT TYYWYRVALD ISDSISEGGG LNWRMTLCLL 240
  241 AAWTMVCLAM IKGIQSSGKV MYFSSLFPYV VLICFLARAF LLKGSVDGII HMFTPKLEIM 300
  301 LEPKVWREAA TQVFFALGLG FGGVIAFSSY NKRDNNCHFD AVLVSFINFF TSVLATLVVF 360
  361 AVLGFKANIM NAKCVEMNTK KIIGFLGKEI NPGLIPHHIN FSQVSPEDYQ QMTNIIQGVM 420
  421 ENDYPRLGLD NCDIKEELNK AVQGTGLAFI AFTEAMTHFP ASPFWSVMFF LMLVNLGLGS 480
  481 MFGTIQGILT PIVDTFKVRK EYLTVGCCVL AFFIGLTFVQ RSGNYFVAMF DDYSATLPLL 540
  541 IVVLLENIAV AWVYGTDKFF EDLKDMLGFT PYRYYYYMWK FVTPVLLLGL LAASVIQLGL 600
  601 APPSYSAWNQ QLAKEQSLSY PPWGLAVCIS LVVTAILPVP VVFILRCLNI IDEKTGGLST 660
  661 VSYKKGRIIK DTACRTREDD EDDASLLNAK TPSEAPSPMP ANYRKQSGPA SAADAKLNGS 720
  721 CSTGYLMPNI TDIPDMPESD L