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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|165993305, gi...
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQHALSVM RLGENQVRGN GAPPEKGVSQ AAYFSQQPQD QVVVAGQSVT LPCVIVGYRG  60
   61 MVQWTKDGLA LGGERDLPGW VRYSLMGDPL SGEHSLVIDS AELGDDAIYE CQATQAGLRS 120
  121 HRAKLTVLVP PSDPIVEGGP VVRLKAHTPH NLTCRASGAK PAAEITWYRD GEIMQNAIYS 180
  181 KSLMEDGKRE TAVSMLPMVP EDSDSGRTYT CRVLNPAAPA GRQTSVTINV QHPPSVTLSV 240
  241 QPQTVMEGAK VLFICSASAN PEITGYRWSK GGVPISEANG DSLEVTADHS YFTDPVSCEV 300
  301 SNSVGSTNVS TLVDVQFGPR LLTEPKPQIV DIGMDAAFTC SWTGNPPLTL AWTKQGSNVV 360
  361 LSNSNTLQLK AVTQDDTGTY TCKAIVPRIG VAERDVTLTV NGPPIITAEA TQQAIKHSKG 420
  421 KLECLVGSSP PPDKIVWTFG DMMLSSGSSG RFSVQTVNSD QGVLSSLILS ETLAQDFQLR 480
  481 YNCTAWNRFG TGTALVTLEE QEALPLLIII GASVGGGCVF IVCVITLVSI CCRHNAKGKK 540
  541 GTRLSKSDIR VQIVHSDHNA ARGNDDEEDV KEPMAPNSSE SPGTSRTEHS DLLEEEDDER 600
  601 SDIKDPTNGY YNVRAHEDRH ITRTGFSEYA NNARPVYTPT QLPSPSPLYG QHSTQPRIYD 660
  661 FSQRYATTPA NRTTYEQQQP QQPQQQPQTP TAYPQETVYS GSTYLPATYG RAFTSYVKPA 720
  721 SYEKVDGYEH SDQASKVSSS SRFSYASSQV SSQQSDYGRP SQQRMQTHV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle