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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68375175
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNKNGDEQT QSELPGMSGG ERARIRVRCS DLGRGQAARI RVLITGVVRG QAERVRVCIT  60
   61 SVGRGQAEGC LICEKVHQAP PDVLCKPDDS VELTCSHNID NYDTILWYQK SKGDSSLKLI 120
  121 GYARYSSAKD IEKSYMGHFN VTGNGEEEAT LRILKARLDQ DTCVLCKDVH QSPPAVVCDT 180
  181 DSPSTVNLTC SHGIKSYDTI LWYQSNVGDT EMKLVAYMYY KTPKTEDPFV NGFDVSGVVF 240
  241 SDKVHQSPNA ILWSPEGRAE INCRHDISTY DTLQWYQQTD NTLKLIGYVY YEQRNIENAF 300
  301 EKRFNVSGHG KTHSTLYLLQ LRSPEDSAVY YCAAYYHMNS SIIQTPSDLL ANNTESVSLH 360
  361 CSHSSSAFNV ILWYKQLLNG EMQLMGHLYR TNNNTETLFT DKIELLGNGA SSSILSMAVN 420
  421 VIQTPTELFL DTGATLNITC SHNDRSLDKI FWYQQFNGRN LELIGFLSFK QRLVDKKEFT 480
  481 ITGDAEKEAT LVLSSVKAEH SAVYFCAQSP KELLTVEVKD TNLSCHHGES SYPYMLWYQQ 540
  541 KSNGGSLELI GLLTFGSFSP EDKFKSRFST FGDSTKEAFL LISKDWLSKF GYLPPSDPVN 600
  601 GQLQTKEALT KAIKAMQRFG GLEETGVLDQ ATLGLMKTPR CSLPDMSEPD LSAGRRKRAL 660
  661 APQNKWNKRH LSWRVRTFPK ESTSLGRDTV RALMYYALKV WSDIAPLNFH EVAGNEADIQ 720
  721 IDFTKADHND GYPFDGPGGT VAHAFFPGER FTAGDTHFDD DEAWTFRAPD SHGMDLFAVA 780
  781 VHEFGHAIGL AHTSAIESIM RPYYQGPVGD PLKYNLAYED KVRVWQLYGV RDSVSHTLKP 840
  841 DDPSQTAEPP VLLDLPENRS TIPPARDAPD RCTSHFDAVA QIRGEAFFFK GKYFWRLTRE 900
  901 KHLVSLRPAQ IHRFWRGLPA NLDSVDAVYE RPGDHKIVFF KGGKYWVFKD NNVEEGYPRS 960
  961 VSDFGLPVEG VDAVFVWQHN EKTYFFKDNR YWRYDDHLRR MDLGYPKDMA LWKGIPAQLD1020
 1021 DAMRWSDSAS YFFKGKEYWR VAGSDMEVEV GYPRPIGKDW LVCTEMQSDS PEMQNNSNTR1080
 1081 LHGQHHADHA ENGYEVCSCT SDSASPLGTR LTLSPAWVFA PLLTLALALS SAPL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle