YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121955989, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFNETPTE AHLENYNYIF ADETYKLLTF TIGSIGVLGF CNNIIVIILY SRYKRLRTPT  60
   61 NLLIVNISVS DLLVSLTGVN FTFVSCVKRR WVFNSATCVW DGFSNSLFGI VSIMTLSGLA 120
  121 YERYIRVVHA KVVDFPWAWR AITHIWLYSL AWTGAPLLGW NRYTLEVHQL GCSLDWASKD 180
  181 PNDASFILFF LLGCFFVPVG VMVYCYGNIL YTVKMLRSIQ DLQTVQTIKI LRYEKKVAVM 240
  241 FLMMISCFLV CWTPYAVVSM LEAFGKKSVV SPTVAIIPSL FAKSSTAYNP VIYAFMSRKF 300
  301 RRCMLQMLCS RLTSLQHTIK DRPLSRIEHP IRPIVMSQSR TDRPKKRVTF SSSSIVFIIA 360
  361 SHDTHPLDIT SKCNDEPDIN VIQVRPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.96
Transmembrane Helix	27	50	0.90
Cytoplasmic	51	61	0.86
Transmembrane Helix	62	84	0.89
Non-Cytoplasmic	85	101	0.85
Transmembrane Helix	102	121	0.90
Cytoplasmic	122	136	0.86
Transmembrane Helix	137	160	0.80
Non-Cytoplasmic	161	185	0.94
Transmembrane Helix	186	207	0.96
Cytoplasmic	208	236	0.94
Transmembrane Helix	237	258	0.92
Non-Cytoplasmic	259	273	0.86
Transmembrane Helix	274	295	0.82
Cytoplasmic	296	387	0.87